Christmas Shuffle [Repost]

The Best of ChristmasOriginally posted on 20 December 2012.

Last year our eldest daughter (then 3, now 4), The Frogger, fell in love with the song “Rudolph the Red-Nosed Reindeer”. This year she is obsessed with “A Holly Jolly Christmas”. It is no coincidence that both songs are performed by Burl Ives in the Rankin/Bass classic Rudolph the Red-Nosed Reindeer.

Cut to me, in the car, frantically pushing buttons to cycle through CDs and play Burl Ives singing “A Holly Jolly Christmas” in order to fulfill the heartfelt request of my child. Experienced parents will know that there are a variety of potential motivations for such behavior beyond simply avoiding a tantrum, for example cutting short a half-hour of repeatedly yelling the same three lines of the song with 73.21% accuracy.

Having found the correct CD and as I pushed buttons to get to the right track, I began to wonder if I was taking the shortest route to my song of choice. There are three possible routes to any given track on my car’s CD player. Continue reading “Christmas Shuffle [Repost]”

Lucretius the Epicurean

If you have been following Mike’s Sunday Science Poem series, you know that we are fans of Lucretius. Lucretius was a Roman poet and philosopher in the first century BC. He is famous for his only extant work De Rerum NaturaThe Nature of Things, covering many topics near and dear to the hearts of modern scientists.

I am also a fan of the podcast History of Philosophy Without Any Gaps by Peter Adamson at King’s College London and LMU Munchen. Lucretius was an Epicurean, which is one of the many schools of philosophy covered. It may not be a replacement for studying philosophy in school, but listening to episodes 55-59 (including an episode on Lucretius himself) will help you understand the philosophical paradigm Lucretius was using when he wrote his great poem, especially when you are reading Mike’s series of posts on Lucretius:

Sunday Poem

Sunday Science Poem: The Epicurean Theory of Vision, and Bedwetting in Ancient Rome

Sunday Science Poem: Why You Should Read Lucretius

Lucretius Did Not Believe in Non-Overlapping Magisteria

Lucretius and The Fear of Death

There is Grandeur in Lucretius’ View of Life

Lucretius: Lightning is Not a Means of Divine Communication

 

Science Caturday: One Code, Two Code…

Like a DNA nucleotide, this LOLcat is capable of playing multiple roles. It is good for creation vs. evolution, and so much more. Global warming vs. something else? You are covered. Homeopathy vs. physics? Done. Duons vs. the genetic code? In the bag.

Duons vs. the genetic code? What is a duon?

Good question. A duon is a DNA nucleotide that can do two roles. This perhaps makes it a rather lame nucleotide. DNA nucleotides have a lot of potential tasks they can do (eg, help encode an amino acid, be part of a protein binding site, indicate a splice site, etc) as part of their role storing information in our cells. The idea that a nucleotide might be subject to evolutionary pressure from several different tasks simultaneously is nothing new.

There is, as Emily Willingham points out at Forbes, no real “duon” controversy outside the minds of the folks that wrote the press release (and, perhaps, John Stamatoyannopoulos, if the press release quote is accurate, which I suspect it might be based on his advocacy for the ENCODE Consortium’s “junk DNA is functional” boondoggle). These researchers have provided some evidence to support the hypothesis that evolutionarily conserved codon bias (using one codon, of the several possible for an amino acid, in the genetic code more than expected by chance) is due to selection to maintain transcription factor binding sites.

This is not an unreasonable hypothesis, but it is hardly shocking, hardly requires a new term, and is hardly a controversy.

Word of the Year

In contrast to the much derided, but pop culture appropriate, decision that selfie was the word of the year, the editors of the Merriam-Webster Dictionary have chosen science as their Word of the Year.

HUZZAH! Maybe. Continue reading “Word of the Year”

It’s a beautiful day in the neighborhood…

How is astronomy like biology? Every time we build better tools for observation (eg, space telescopes & next-generation sequencers), we learn about the incredible variety of things that we are missing and get to wildly speculate about what it all means (we also get to regularly confuse “wild speculation” for actual “knowledge”).

“Exoplanet Neighborhood” by Randall Munroe at xkcd (CC BY-NC 2.5)