During my postdoc in Jernej Ule’s lab at the Laboratory of Molecular Biology in Cambridge (UK), we studied the genome-wide regulation of splicing (aka, alternative splicing, but these days all splicing is “alternative”). This involved integrating information on protein-RNA interactions with information on splicing isoforms (mRNA transcript variants from the same gene) from next generation sequencing. I could spend hours talking to you about how complicated this type of thing can get. Or, I can show you this figure from Eduardo Eyras.
The Finch and Pea 
He should start all of his talks with this picture and say ‘this is the outline of my talk.’
I have been to that talk. Not by Jernej, but I have been to it. Several times.